The invention is applicable within the food and pharmaceutical industry. More specifically, it relates to a novel strain of the species Bifidobacterium animalis subsp. lactis CECT 8145, the cell components, metabolites and secreted molecules thereof, which, incorporated into food and/or pharmaceutical formulations, can be used in the treatment and/or prevention of excess weight and obesity and related diseases such as metabolic syndrome, hypertension, glycemia, inflammation, type 2 diabetes, cardiovascular diseases, hypercholesterolemia, hormonal alterations, infertility, etc.
1. A composition comprising:
a strain belonging to the species and a food formulation selected from the group consisting of fruit juice, vegetable juice, ice cream, infant formula, milk, yogurt, cheese, fermented milk, powder milk, cereals, bakery products, cereal-based products, nutritional supplements, soft drinks and dietary supplements. 2. The composition according to 3. The composition according to 4. The composition according to 5. The composition according to 6. The composition according to 7. A method for the treatment of overweight, obesity, or related diseases comprising administering to a subject in need thereof a therapeutically effective amount of the composition according to 8. The method according to
The present patent application is a national phase application of International Application No. PCT/ES2014/070579, filed Jul. 17, 2014, which claims priority to Spanish Application No. P201331088, filed Jul. 18, 2013, the disclosures of which are incorporated herein by reference. The present invention falls within the food and pharmaceutical industry. It relates in particular to a new strain of the species Obesity and overweight are metabolic and nutritional disorders with serious health consequences, overweight being a degree of obesity. Despite improved clinical and epidemiological knowledge of this problem, the prevalence of obesity and overweight has increased significantly in industrialized and developing countries. Obesity is a recognized high-risk factor in the incidence of various chronic diseases/disorders such as hypertension, ischemic heart disease, brain stroke, type-2 diabetes and certain forms of cancer, which are important causes of morbidity and mortality in developing countries in the Western world. In the struggle against overweight and obesity, the food industry has introduced new ingredients in order to help consumers maintain an appropriate weight. In the field of research and new product development, one option is to add certain ingredients that act by inhibiting the accumulation of energy as fat, either by decreasing fat absorption or formation, or by stimulating fat mobilization with increased lipolysis, or by improving lipid oxidation rates. Another strategy that acts positively on the prevention or treatment of overweight and obesity is to control and/or reduce appetite by the induction of satiety, activating the metabolic regulation of appetite. Similarly, some studies suggest that obesity is accompanied by a state of chronic oxidative stress, which has been proposed as the link between obesity and some comorbidities such as insulin resistance and cardiovascular disease. (Molnar D, Decsi T, Koletzko B. “Reduced antioxidant status in obese Children with multimetabolic syndrome” Moreover, the intestinal microbiota and probiotics have a positive effect on health by regulating immunological functions and protecting the individual from infections and chronic inflammatory conditions. Studies indicate that the intestinal microbiota is a factor that may play a role in regulating body weight and obesity-associated diseases/disorders. Therefore, manipulation of the intestinal microbiota through diet is proposed as a potential new tool to prevent or alter the risk of obesity, and particularly the associated metabolic diseases/disorders. In this respect, numerous beneficial effects have been attributed to strains belonging to species In addition, other specific examples in this respect are the strains Thus, in the paper entitled “ Similarly, the U.S. patent document US20120107291 describes the strain According to information in the said patent application, strain B420 acts by positively influencing the immune system via the gut-associated lymphoid tissue and displays the ability to improve glucose tolerance, reduce mesenteric fatty tissue, reduce inflammatory indices, etc. However, the information available on this strain does not mention anything regarding its possible ability to induce a reduction in appetite or increase satiety nor does it claim the antioxidant capacity of the said strain. The non-patent reference document, entitled “ The U.S. patent document US2008267933 describes the strain In consideration of the above, the technical problem object of the present invention relates to the provision of novel microorganisms that can be used as ingredients in food and pharmaceutical formulations to provide improved therapeutic and/or preventive activity against overweight and obesity and associated diseases/disorders. The above described technical problem has been solved by the provision of strain Unlike strains belonging to the same species in the prior art, in addition to reducing body fat, ingestion of the strain of the present invention, and food and pharmaceutical formulations containing the said strain, can induce satiation and reduce appetite as well as increase resistance to oxidative stress in mammals. Additionally, the strain of the present invention, as well as the dietary and pharmaceutical formulations containing it, reduce total cholesterol and triglyceride levels in blood, in addition to reducing the concentration of glucose and some inflammatory markers. All this leads to the conclusion that the effects of the strain of the present invention, as well as the food and pharmaceutical formulations containing the said strain, are effective in the management of overweight, that is, in the treatment and/or prevention of obesity and associated diseases/disorders and that the strain of the present invention is superior to other strains of the same species in the prior art. The present invention relates to a new strain of the species The strain of the invention and products derived thereof, object of the present invention, act by modulating the differential expression of certain genes that positively affect the reduction of body fat, which makes the strain of the present invention particularly effective in the treatment and/or prevention of overweight and/or obesity and associated diseases/disorders, such as: metabolic syndrome, hypertension, hyperglycemia, inflammation, type-2 diabetes, cardiovascular disease, high cholesterol, hormonal disorders, infertility, etc. After mammals ingested the strain of the present invention, they experienced a reduction in body fat and weight, in total triglyceride, total cholesterol, glucose levels and TNFα factor, and an increase in adiponectin. Additionally, it led to an increase in satiety as demonstrated by a reduction in ghrelin levels, as well as an increase in resistance to oxidative stress, as demonstrated by a reduction in the concentration of malondialdehyde in mammals treated with the strain of the present invention. The transcriptomic study of the strain of the present invention shows that intake of the said strain up-regulates metabolic pathways and processes related to the metabolism of carbohydrates (including oxidative phosphorylation and ATP synthesis), glutathione metabolism (reduction in oxidative stress levels), the biosynthesis of cofactors and vitamins, lipid metabolism, nucleotide metabolism, glycosylation and membrane metabolism. Moreover, as confirmed by the metabolomic study of the strain of the present invention, details of which are provided in the experimental part of the patent specification, the intake of this strain induces a series of metabolic changes associated with the antioxidant metabolism and with the metabolism of carbohydrates and nucleotides. Regarding the reduction in oxidative stress levels, the glutathione metabolism is identified as a target of the present strain, and an up-regulation of the pentose phosphate pathway and of glycosylation are notable, also various changes in the metabolism of glycogen, nucleotides, lipids and cofactors are apparent. The object of the present invention is a microorganism, as well as the food and pharmaceutical formulations containing it, which has useful application to the treatment and prevention of overweight and obesity in mammals and related diseases/disorders. The said microorganism relates, specifically, to a new strain of the species In this patent application, the strain of the invention For the purposes of the present invention, the terms “related or associated diseases/disorders” and “diseases/disorders caused by overweight and/or obesity” comprise: metabolic syndrome, hypertension, hyperglycemia, inflammation, type-2 diabetes, cardiovascular disease, hypercholesterolemia, hormonal disorders, infertility, etc. For the purposes of the present invention, the term bioactive products derived from the strain of the present invention, are defined as its cell components, and the compounds and molecules that form part of the strain, such as the metabolites and molecules secreted thereof, such as: intracellular components (e.g., DNA, peptides, fatty acids, etc.) cell-wall components (proteins, peptides, fatty acids, etc.) that confer the desired preventive or therapeutic activity. The term food formulation is defined as functional foods, probiotics, synbiotics, dietary supplements and/or nutraceutical incorporating strain of the present invention, the bioactive products derived thereof, the supernatant and/or extract and/or the culture of the same. In the context of the present invention, pharmaceutical formulations are defined as those which incorporate the strain of the present invention, the bioactive products derived thereof, the supernatant and/or extract and/or culture of the same, combined with, at least one pharmaceutically acceptable excipient and/or carrier. Pharmaceutically acceptable excipients and/or carriers used in the present invention are known in the prior art to experts in the art. The inventors of the present invention have identified a new strain, namely CECT8145 belonging to the species Comparative genomic studies between the strain of the present invention and other strains belonging to the same species of the prior art, namely, strains B420 and Bb12, show that the strain of the present invention has genes and genome regions that are unique and do not have corresponding homologues in the other two strains (B420 and Bb12). Specifically, the genomic studies conducted determined that the strain of the present invention, unlike strains B420 and Bb12, lack genes corresponding to molecular lipid-binding function. One of the novel biological activities of the strain of the present invention is its antioxidant activity and, consequently, its ability to increase resistance to oxidative stress. Oxidative stress is caused by an imbalance between free-radical production and the antioxidant defences that are responsible for detoxifying the said radicals in the organism. In obese patients, oxidative stress is not generated by a single mechanism but by the confluence of several factors that may, ultimately, be summarized as a decrease in antioxidants together with an increase in pro-oxidant elements. Several studies report a direct relationship between obesity and decreased activity of the main antioxidant enzymes. The resistance to oxidative stress induced by the biological activity of the strain of the present invention is demonstrated by the reduction in malondialdehyde concentrations in mammals treated with the strain of the present invention ( Malondialdehyde is a marker indicating oxidation rates in the body: the level of this marker increases parallel to the increase in oxidation rates, with reduced protection against oxidative stress; and vice versa. Another novel biological activity of the strain of the present invention is its ability, after ingestion, to increase satiety, reducing ghrelin levels ( Ghrelin is the only known circulating hormone that can potentially increase or stimulate appetite and therefore acts as a regulator of hunger and body weight. It is a gastrointestinal neuropeptide (endogenous ligand of the growth hormone secretagogue receptor) recently isolated from the oxyntic mucosa produced mainly in the stomach. Its concentration in blood depends on diet, hyperglycemia, adiposity and leptin. It is secreted 1-2 hours before eating and its concentration decreases dramatically after eating. It acts in the lateral hypothalamus and, theoretically, inhibits proinflammatory cytokine secretion and antagonizes leptin. Ghrelin physiologically increases gastric acid secretion and has other hormonal and cardiovascular functions. The strain of the present invention is capable of decreasing ghrelin levels, thus increasing satiety. Additionally, the strain of the present invention causes a reduction in the level of total triglycerides, cholesterol, glucose, TNFα factor, and an increase in adiponectin levels ( It has been shown that the reduction in body fat levels resulting from ingestion of the strain of the present invention are surprisingly higher than the levels corresponding to other strains of the genus The results illustrated in Example 1 herein confirm that the ingestion of the strain of the present invention reduces body fat in the nematode Likewise, when the strain of the present invention is incorporated into a food product, such as yogurt, fermented soy or juice, its effect on body-fat reduction is over 11% higher than the effect produced by conventional products: yogurt, fermented soy or juice ( As reported in detail in the experimental part provided as way of example, the transcriptomic study shows that ingestion of the strain of the present invention up-regulates the metabolic pathways and processes related to carbohydrate metabolism (including, oxidative phosphorylation and ATP synthesis) glutathione metabolism (reduced oxidative stress levels), the biosynthesis of cofactors and vitamins, lipid metabolism, nucleotide metabolism, glycosylation and membrane metabolism. Moreover, as confirmed from the metabolomic study, details of which are provided in the experimental part of the patent specification, the ingestion of this strain induces a series of metabolic changes associated with antioxidant metabolism and carbohydrate and nucleotide metabolism. Glutathione metabolism is identified as a target of this strain for the reduction of oxidative stress levels, and the up-regulation of the pentose phosphate pathway and of glycosylation is also notable, with various changes also being apparent in glycogen, nucleotide, lipid and cofactor metabolism. Said metabolonomic changes confirm the biological activities related to body-fat reduction, and protection against oxidative stress induced by the strain of the present invention. These results have been confirmed by a study with mutants of the nematode Specifically, we have identified the following differentially expressed genes: Acox-1, Acs-5, Daf-22, Fat-7, Daf-16, Sod-4, Trxr-2, Asg-2 and Tph-1. Genes Acox-1, Acs-5 and Daf-22 encode enzymes of fatty acid beta-oxidation in peroxisome; genes Fat-7 and Daf-16 encode the enzymes involved in the fatty-acid desaturation process; genes Sod-4, Trxr-2 and Asg-2 encode enzymes involved in maintaining the redox cell balance and removing ROS; gene Asg-2, alone, encodes an enzyme involved in oxidative phosphorylation processes; and gene Tph-1 encodes an enzyme involved in triprophan metabolism and hence in serotonin synthesis. The strain of the present invention and the bioactive products secreted thereof, as well as the supernatants, the culture and/or extracts of the said strain, can be formulated, individually or in combination with other microorganisms and/or functional ingredients, and incorporated into food or pharmaceutical formulations for use in accordance with the present invention. When the strain of the present invention is incorporated into food or pharmaceutical formulations in combination with other microorganisms, the latter should preferably belong to the genera The present invention also relates to a formulation incorporating the bioactive compounds derived from the strain of the present invention, the supernatants and/or cultures of the strain, as well as the extracts obtained from culturing the strain of the invention. Formulations with the present invention, incorporating the strain of the present invention and/or bioactive products secreted thereof and/or supernatants and/or cultures and/or extracts may be food or pharmaceutical formulations. The said food or pharmaceutical formulations may be in liquid or solid, including but not limited to, capsules and/or pills. The food and/or pharmaceutical formulations of the present invention incorporate the strain of the present invention in an amount between 105CFU and 1012CFU per gram or millilitre of formulation, and preferably between 107and 1011CFU/g or CFU/ml. When the food and/or pharmaceutical formulations of the present invention incorporate the bioactive compounds derived from the strain of the present invention, such as supernatants, extracts, peptides, etc., these are incorporated into the formulation in a proportion of between 0.01 and 99% by weight of the total formulation and preferably in a proportion of between 0.01 and 40%. The nutritional formulations incorporating the strain of the present invention, as well as the bioactive compounds derived thereof, supernatants, culture extracts and/or culture, should preferably be one of the following: fruit or vegetable juice, ice cream, infant formula, milk, yogurt, cheese, fermented milk, powdered milk, cereals, bakery products, milk- and/or cereal-based products, nutritional supplements, soft drinks and/or dietary supplements. The dairy food products to which this invention makes reference, such as fermented milk, fresh cheese or yogurt, or their equivalents, dried or freeze-dried, are the preferred suitable vehicles in which to incorporate the strain of the present invention and/or the bioactive compounds derived thereof and/or the supernatants and/or extracts and/or culture. The strain of the present invention and/or the derived bioactive compounds thereof and/or the supernatants and/or extracts and/or culture of the strain may, if necessary, be packaged in gelatine or cellulose capsules or, gel capsules or pills, among other formats, as food or pharmaceuticals. The strain of the invention and formulations containing it, are specially designed for use in mammals, i.e., animals and humans, for the treatment of overweight and obesity and related diseases/disorders. They are therefore objects of the present invention, strain Within the context of the present invention, also an object of the invention is a method to reduce weight, total cholesterol, triglycerides and glucose levels in blood, levels of TNFα factor, malondialdehyde and ghrelin, as well as to increase adiponectin in mammals, characterized by comprising the administration of an effective amount of the strain of the invention, In this respect, it is noteworthy that the present invention contemplates the use of strain of the invention, Nonculturable and/or nonviable cells of the invention, inactivated by different methods (freezing, heat, radiation, etc.) can be used according to the present invention, and form part of the present invention, since the desired effects are exerted, at least partially, by structural components (such as DNA, cell wall components, etc.). This means the strain of the present invention retains some of its properties against metabolic syndrome and related diseases/disorders without necessarily being culturable/viable. Thus, as shown in Example 4, an inactivated culture of the strain of the present invention reduces body fat in the animal model The following figures and examples are provided below in order to illustrate the present invention and are in no way intended to be limiting of the present invention. Screening Bacteria for Body-Fat Reduction in Twenty-three strains of the genus The experiments consisted of feeding Fat droplets were stained by direct addition of Nile red dye to the plates of NG medium. Nematodes were incubated at 20° C. under the different feeding conditions throughout the test period. After the feeding period, samples of each condition were taken and the fluorescence emitted in each case was quantified. The control feeding condition (NG medium+ Based on the results obtained from the 38 strains tested, the strain Taxonomic Identification and Genomic Sequencing 2.1. Identification Strain BIF-1 was identified unambiguously at genus and species level by sequencing the ribosomal DNA (rDNA) 16S. The sequence was identified by comparing the BIF-1 strain sequence with the complete gene sequences deposited in public databases using the BLAST online (http://blast.ncbi.nlm.nih.gov/Blast.cgi), the highest homology (99%) was obtained with public sequences belonging to the species 2.2. Genome Sequencing In order to characterize the genomic level and safety and functionality of strain BIF-1 we performed whole-genome sequencing of strain BIF-1 by pyrosequencing on a Life Science-Roche 454 platform. A total of 434,581 raw sequences were obtained. Further de novo sequence assembly organized sequences on five scaffolds, the largest being 1,923,368 nucleotides. The genome size of strain BIF-1 is estimated at 2.1 Mb. Genes encoding virulence factors were not detected nor were antibiotic resistance genes located in areas at risk of horizontal transfer. Quantification of Triglyceride Reduction in BIF-1-Treated The effect of strain BIF-1 ingestion on triglyceride reduction was analyzed in Triglycerides were determined from synchronized young adult Body-Fat Reduction in The fat-reducing functional effect of inactivated BIF-1 cells was analyzed in The tests consisted in feeding Fat droplets were stained by direct addition of Nile red dye to the plates of NG medium. Nematodes were incubated at 20° C. under the various conditions during the test period. After the feeding period, samples were taken of each condition and the fluorescence emitted in each case was quantified. The control feeding condition (NG medium+ The results ( Antioxidant Activity of Strain BIF-1 in We analyzed whether the ingestion of strain BIF-1 increased resistance to acute oxidative stress in The tests were carried out following the Methodology described by Martorell et al. (2011). Transcriptomic Study in We studied the effect of 6.1. Differential Gene Expression in BIF-1-Treated Nematodes Nematodes fed strain BIF-1 showed a different gene-expression profile compared to nematodes under control feeding conditions. Thus, they presented 296 over-expressed genes and 26 under-expressed genes compared to control nematodes (Table 1). Screening of the 296 genes over-expressed in BIF-treated nematodes revealed different functional groups. The aforementioned genes are related to proteolysis, reproduction, embryonic development, carbohydrate metabolism, molting cycle, body morphogenesis, locomotion, redox processes, protein metabolism, transport, glutathione metabolism, aromatic amino acid metabolism, response to gamma radiation, fatty acid metabolism and neuropeptide signalling pathways. The 26 under-expressed genes in BIF-1-treated 6.2. Metabolic Pathways Concerning the metabolic pathways, it was determined that Nematodes fed BIF-1 exhibited 23 upregulated and 20 downregulated metabolic pathways compared to control nematodes (Table 2). Tables 3 and 4 list the upregulated or downregulated metabolic pathways after treatment with the BIF-1 bifidobacteria strain. 6.3. Biological Processes In nematodes fed strain BIF-1, a total of 26 biological processes were over-expressed while 76 processes were under-expressed as compared to the Control (Table 5). Tables 6 and 7 list of the over-expressed and under-expressed processes in BIF-1-treated nematodes in detail. In summary, the results of the transcriptomic study show that in the nematodes fed on strain BIF-1 there was an upregulation of the metabolic pathways and processes related to carbohydrate metabolism (oxidative phosphorylation, ATP synthesis, etc.) glutathione metabolism (decreased levels of oxidative stress), biosynthesis of cofactors and vitamins, lipid metabolism, nucleotide metabolism, glycosylation and membrane metabolism. Metabolomic Study in We analyzed the changes in the metabolic profile of The trials involved feeding After this time, nematodes were subjected to a metabolomic analysis, applying analytical techniques, LC-MS/MS (ESI+) (−ESI) and GC-MS, and subsequent bioinformatic processing of the data. The results showed statistically significant changes, as listed below:
In summary, feeding strain BIF-1 to These results are consistent with those observed in the transcriptomic study (Example 6). Identification of Differentially Expressed Genes In order to explain the mechanism of action from the transcriptomics results described in Example 6, we undertook a trial to evaluate body-fat reduction in Pre-Clinical Trial in a Murine Model A trial was undertaken in an obese Zucker rat model fed three different doses of the probiotic strain BIF-1 (108, 109and 1010CFU/day), and included two groups of lean Zucker rats as Control. The trial lasted 12 weeks, body weight was determined, and the solid and liquid intake during the test period was recorded. In addition, at the end of the trial biochemical data were determined: total cholesterol, HDL cholesterol, triglycerides, TNFα factor (inflammation marker), malondialdehyde (marker of oxidative stress), adiponectin and ghrelin (markers of satiety). The results are shown in In summary, the results of pre-clinical study in the murine model showed a positive effect on weight reduction in obese Zucker rats fed BIF-1 at doses of 1010CFU/day (reduction in weight gain of 6.42% for treatment vs. control group). In addition, animals fed BIF-1 had a lower solid intake. Moreover, the determination of biochemical parameters showed a decrease in total cholesterol, accompanied with an increase in HDL cholesterol in rats fed BIF-1, as well as a slight drop in triglycerides and glucose levels. Finally, BIF-1 treatment resulted in a reduction in levels of TNFα factor, malondialdehyde and ghrelin, while there was an increase of adiponectin. Safety Study The safety of strain BIF-1 was performed following FAO/WHO guidelines (FAO/WHO, 2002). Specifically, the production of unwanted metabolites was evaluated: lactic acid isomer production (Table 9), bile-salt deconjugation (Table 10) and biogenic amine production (Table 11), and the antibiotic resistance profile (Table 12). Probiotic Properties of Strain BIF-1 One of the main requirements for a strain to be considered probiotic is that it can survive gastrointestinal transit. Therefore, strain BIF-1 was tested for its resistance to digestive conditions. Accordingly, two tests were performed: one of resistance of low pH levels and the other of resistance to bile salts. In the first, the strain was put into contact with saline solution (0.09% NaCl) at decreasing pH levels for 15 minutes and the number of live cells ( Functional Yogurt Fermented with Strain BIF-1 ( First, the fermentative capacity of BIF-1 was analyzed in a milk matrix. To do so, a volume of commercial skim milk was inoculated with different doses of bacteria (106, 107and 108CFU/mL) and incubated for 24 h at 37° C. The results showed a positive fermentation of the probiotic inoculated at 107and 108CFU/mL. Subsequently, functional yogurt was made by adding 108CFU/mL of BIF-1 and a mixture of commercial yogurt Bifidobacteria ferments on commercial skim milk and milk powder (0.6%). A control fermentation containing only commercial yogurt strains ( Finally, to analyze the effect of the yogurt obtained on reducing body fat, a functional study was performed in the pre-clinical model Also, the same degree of body-fat reduction was determined in Juice Supplemented with Strain BIF-1 ( Commercial orange juice was supplemented with different doses (106, 107and 108CFU/mL) of active and inactive cells of BIF-1 strain ( The results (CROSS-REFERENCE TO RELATED APPLICATIONS
TECHNICAL FIELD OF THE INVENTION
BACKGROUND OF THE INVENTION
BRIEF DESCRIPTION OF THE INVENTION
DETAILED DESCRIPTION OF THE INVENTION
DESCRIPTION OF THE FIGURES
EXAMPLES
Example 1
Example 2
Example 3
Example 4
Example 5
Example 6
Differential gene expression observed in Number genes Number genes under- without differential Number over- expressed expression expressed genes BIF-1-treated 26 22303 296 vs Control Number of metabolic pathways differentially expressed in Number Number Number unaffected upregulated downregulated metabolic metabolic metabolic pathways pathways pathways BIF-1-treated 20 55 23 vs. control List of upregulated metabolic pathways in treatment compared with the Control. ID: identification according to KEGG database. ID KEGG Metabolic pathways upregulated in BIF-treated vs. Control 00190 Oxidative phosphorylation 00480 Glutathione metabolism 00982 Drug metabolism - cytochrome P450 00980 Metabolism of xenobiotics by cytochrome P450 00983 Drugs metabolism - other enzymes 00670 Folate biosynthesis (vitamins and cofactors metabolism) 04142 Lysosome 00260 Glycine, serine and threonine metabolism 00330 Arginine and proline metabolism 00860 Porphyrin and chlorophyll metabolism 00270 Cysteine and methionine metabolism 01040 Unsaturated fatty acid biosynthesis 00040 Pentose and glucuronate interconversions 04146 Peroxisome 00590 Arachidonic acid metabolism 00053 Ascorbate and aldarate metabolism 00514 Other types of O-glycan biosynthesis 00910 Nitrogen metabolism 00250 Metabolism of alanine, aspartate and glutamate 00380 Tryptophan metabolism 00620 Pyruvate metabolism 00650 Butanoate metabolism 00410 Beta-alanine metabolism List of downregulated metabolic pathways in BIF-1-treated compared to the Control. ID: identification according to KEGG database. Metabolic pathways downregulated in BIF-treated vs. ID KGGE Control 04330 Notch signalling pathway 03440 Homologous recombination 04340 Hedgehog signalling pathway 03410 Damaged DNA repair (base excision repair) 04310 Wnt signalling pathway 03018 RNA degradation 04710 Circadian rhythm 04150 mTOR signalling pathway 03430 Damaged-DNA repair (mismatch repair) 03420 Nucleotide excision repair 03050 Proteasome 03013 RNA transport 04350 TGF-beta signalling pathway 03015 mRNA surveillance pathways 03040 Spliceosome 04120 Ubiquitin-mediated proteolysis 03030 DNA replication 04141 Protein processing in endoplasmic reticulum 04144 Endocytosis 04914 Progesterone-mediated oocyte maturation Number of biological processes differentially expressed in strain BIF-1 compared to the Control. Under-expressed GO Over-expressed GO BIF-1-treated vs. Control 76 26 List of the 26 biological processes over-expressed in BIF-1-treated GO Name GO: 0030259 Lipid glycosylation GO: 0006937 Regulation of muscle contraction GO: 0042775 Mitochondrial ATP synthesis coupled to electron transport chain GO: 0009156 Ribonucleoside monophosphate biosynthetic processes GO: 0034220 Transmembrane ion transport GO: 0009072 Aromatic amino acid metabolism processes GO: 0030241 Skeletal muscle myosin thick filament assembly GO: 0009112 Nucleobases metabolism processes GO: 0015992 Proton transport GO: 0006508 Proteolysis GO: 0040018 Positive regulation of multicellular organism growth GO: 0034607 Behavior involved in mating GO: 0007218 Neuropeptide signalling pathway GO: 0046942 Carboxylic acid transport GO: 0072529 Catabolic processes of pyrimidine containing compounds GO: 0042398 Modified amino acid biosynthetic process GO: 0015833 Peptide transport GO: 0006754 ATP biosynthesis processes GO: 0009063 Cellular amino acid catabolic process GO: 0048521 Negative regulation of behaviour GO: 0055074 Calcium ion homeostasis GO: 0006637 Acyl-CoA metabolic processes GO: 0042338 Cuticle development involved in collagen and cuticulin-based cuticle molting cycle GO: 0006814 Sodium ion transport GO: 0036293 Response to decreased oxygen levels GO: 0009069 Serine family amino acid metabolic process List of the 76 biological processes under-expressed in BIF-1-treated GO Name GO: 0016477 Cell migration GO: 0008406 Gonad development GO: 0040027 Negative regulation of vulva development GO: 0042127 Regulation of cell proliferation GO: 0040020 Regulation of meiosis GO: 0006511 Ubiquitin-dependent protein catabolic process GO: 0045167 Asymmetric protein localization during cell fate GO: 0000070 Mitotic sister chromatid segregation GO: 0051729 Germinline cell cycle GO: 0007052 Mitotic spindle organization GO: 0007098 Centrosome cycle GO: 0070918 Production of small RNA involved in gene silencing GO: 0045144 Meiotic sister chromatid segregation GO: 0032465 Regulation of cytokinesis GO: 0000079 Regulation of cyclin-dependent protein serine/threonine kinase activity GO: 0009410 Response to xenobiotics GO: 0030261 Chromosome condensation GO: 0007606 Sensory perception of chemical stimulus GO: 0035046 Pronuclear migration GO: 0090387 Phagolysosome assembly involved in apoptotic cell clearance GO: 0045787 Positive regulation of cell cycle progression GO: 0006261 DNA replication GO: 0006898 Receptor-mediated endocytosis GO: 0001714 Cell fate GO: 0032320 Positive regulation of GTPase activity GO: 0000281 Cytokinesis after mitosis GO: 0090068 Positive regulation of cell cycle process GO: 0030703 Eggshell formation GO: 0018991 Oviposition GO: 0006997 Nucleus organization GO: 0000132 Mitotic spindle orientation GO: 0040022 Germline GO: 0006030 Chitin metabolism GO: 0032506 Cytokinesis GO: 0032880 Regulation of protein localization GO: 0040015 Negative regulation of multicellular organism growth GO: 0045944 Positive regulation of transcription GO: 0008630 DNA damage response GO: 0000122 Negative regulation of transcription GO: 0043066 Negative regulation of apoptosis GO: 0010638 Positive regulation of organelle organization GO: 0000398 Intron elimination/mRNA splicing via spliceosome GO: 0042464 Dosage compensation by hypoactivation of X chromosome GO: 0007127 Meiosis GO: 0042693 muscle cells fate commitment GO: 0032012 Regulation of ARF protein signal transduction GO: 0006310 DNA recombination GO: 0038032 G-protein coupled receptor signalling pathway GO: 0016331 Morphogenesis of embryonic epithelium GO: 0007219 Notch signalling pathway GO: 0008356 Asymmetric cell division GO: 0042026 Protein refolding GO: 0007040 Lysosome organization GO: 0045595 Regulation of cell differentiation GO: 0032446 Protein modification by small protein conjugation GO: 0034968 Histone methylation GO: 0008595 Specification of the anterior/posterior axis in embryo GO: 0001703 Gastrulation with mouth forming GO: 0042176 Regulation of protein catabolism GO: 0006606 Protein import into the neucleus GO: 0031114 Regulation of microtubule depolymerization GO: 0007411 Axon guidance GO: 0006200 ATP catabolism GO: 0016055 Wnt receptor signalling pathway GO: 0000212 Mitotic spindle organization GO: 0006911 Phagocytosis GO: 0046777 Protein autophosphorylation GO: 0035194 Post-transcriptional gene silencing by RNA GO: 0032269 Negative regulation of cellular protein metabolism GO: 0006289 Nucleotide excision repair GO: 0006661 Phosphatidyl inositol biosynthesis GO: 0048557 Embryonic gut morphogenesis GO: 0051295 Establishment of meiotic spindle localization GO: 0006906 Vesicle fusion GO: 0030071 Regulation of mitotic metaphase/anaphase transition GO: 0051053 Negative regulation of DNA metabolism Example 7
Example 8
List of target mutated genes in TRIALS WITH BIF 1 ( OBESITY (name of mutated gene % reduction compared Biological processes appears in brackets) to Control Wild-type N2 29.21 B-oxidation fatty acids VC1785(Acox-1) −15.36 in peroxisome RB2015(Acs-5) 12.59 RB859(Daf-22) 19.03 Fatty acid desaturation BX153(Fat-7) 0.56 GR1307(Daf-16) −2.63 REDOX homeostasis VC175(Sod-4) 3.63 mechanisms RB1764(Trxr-2) −3.3 Oxidative RB2434(Asg-2) 5.39 phosphorylation Tryptophan metabolism GR1321(Tph-1) 18.19 Example 9
Example 10
Production of lactic acid isomers by strain BIF-1 Lactic acid (g/L of supernatant) STRAIN D-Lactic L-Lactic BIF-1 0.020 ± 0.000 2.158 ± 0.025 Bile-salt hydrolysis activity by strain BIF-1 (ND: not detected). BSH activity (U.I./mg of protein BSH activity in cell extract) (U.I./ml of supernatant) Sodium Sodium Sodium Sodium STRAIN glycocholate taurocholate glycocholate taurocholate BIF-1 0.597 ± 0.028 0.127 ± 0.004 ND 0.0 ± 0.0 Biogenic amine production by strain BIF-1 (ND: not detected). Biogenic amines (μg/ml of supernatant) STRAIN Putrescine Cadaverine Histamine Tyramine BIF-1 ND ND ND 0.38 ± 0.14 Minimum inhibitory concentration of antibiotics obtained for strain BIF-1. Antibiotic CMI (μg/mL) Gentamicin 64 Streptomycin 128 Erythromycin 0.5 Vancomycin 1 Ampicillin 2 Tetracycline 8 Kanamycin 128 Chloramphenicol 4 Clindamycin 0.25 Example 11
Example 12
Example 13